BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB022B05SP1|AL427861
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1569 1736 0.0
3x_Contig1712 154 4e-37
3x_Contig1799 146 9e-35
3x_Contig1772 144 4e-34
>3x_Contig1569
Length = 11625
Score = 1736 bits (870), Expect = 0.0
Identities = 896/908 (98%), Gaps = 1/908 (0%)
Strand = Plus / Minus
Query: 1 caaaaagagccgtatatccattgaatcatagagaaagagacagaggtactggcagagtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7318 caaaaagagccgtatatccattgaatcatagagaaagagacagaggtactggcagagtca 7259
Query: 61 ataacttgaattacttattacacaattagggaacgttcgttgattatctataatagcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7258 ataacttgaattacttattacacaattagggaacgttcgttgattatctataatagcttg 7199
Query: 121 tttccataggttattcctaawaagtcatcaagaagctccgaagaatgcactgtatttcat 180
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 7198 tttccataggttattcctaatatgtcatcaagaagctccgaagaatgcactgtatttcat 7139
Query: 181 catttgahctttaatcatctgcagagatgagccagctttttcttgttgatagaaaaaata 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7138 catttgatctttaatcatctgcagagatgagccagctttttcttgttgatagaaaaaata 7079
Query: 241 atgccacctccaggaatcgaacctgggtttcatcggccacaacgatgtgtaataacccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7078 atgccacctccaggaatcgaacctgggtttcatcggccacaacgatgtgtaataacccct 7019
Query: 301 atactaagatggcttatttttgttgtagaatggaaaaawttgggatctaacgctgtttga 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7018 atactaagatggcttatttttgttgtagaatggaaaaatttgggatctaacgctgtttga 6959
Query: 361 cttcaatgttttcactggtaagcaattatatgaatttgatgtgagawttcacttatgaat 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6958 cttcaatgttttcactggtaagcaattatatgaatttgatgtgagatttcacttatgaat 6899
Query: 421 atcaaatattactctgtaattatttaattcaaataaagtgcttgagatagaaggattgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6898 atcaaatattactctgtaattatttaattcaaataaagtgcttgagatagaaggattgga 6839
Query: 481 attgtagattaawtaagtttttattaagaatagagtatgtactacaaaacaaacaataaa 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6838 attgtagattaattaagtttttattaagaatagagtatgtactacaaaacaaacaataaa 6779
Query: 541 tatgtcatcacagaacagggtcatgtcgttaaaggaaagtcagaggagaagataagcccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6778 tatgtcatcacagaacagggtcatgtcgttaaaggaaagtcagaggagaagataagcccc 6719
Query: 601 atggtcaaaaaaaaaaaaaaataaaamataacaacaaaayaaaabgataataatgtaata 660
|||||||||||||||||||||||||| |||| || |||| |||| |||||||||||||||
Sbjct: 6718 atggtcaaaaaaaaaaaaaaataaaatataataataaaataaaatgataataatgtaata 6659
Query: 661 aaacaaatgataggaagtgttagttcattaggtgtgggttcgttacgggggaaaaaatta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6658 aaacaaatgataggaagtgttagttcattaggtgtgggttcgttacgggggaaaaaatta 6599
Query: 721 aattgaaattgaagagaaaagaaggtcggaagtgaggtagaatattgttaaaattcggga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6598 aattgaaattgaagagaaaagaaggtcggaagtgaggtagaatattgttaaaattcggga 6539
Query: 781 gccatgttcatatcaaaccatcccaagaaatcatcattactagagtttccttcgatccaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6538 gccatgttcatatcaaaccatcccaagaaatcatcattactagagtttccttcgatccaa 6479
Query: 841 ccggcgctctgtcgtaggaaaaagtcatcaagttccgagttgacgttcccgttaggtawt 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6478 ccggcgctctgtcgtaggaaaaagtcatcaagttccgagttgacgttcccgttaggta-t 6420
Query: 901 atttgtga 908
||||||||
Sbjct: 6419 atttgtga 6412
>3x_Contig1712
Length = 23668
Score = 154 bits (77), Expect = 4e-37
Identities = 80/81 (98%)
Strand = Plus / Minus
Query: 233 aaaaaataatgccacctccaggaatcgaacctgggtttcatcggccacaacgatgtgtaa 292
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9879 aaaaaagaatgccacctccaggaatcgaacctgggtttcatcggccacaacgatgtgtaa 9820
Query: 293 taacccctatactaagatggc 313
|||||||||||||||||||||
Sbjct: 9819 taacccctatactaagatggc 9799
>3x_Contig1799
Length = 39855
Score = 146 bits (73), Expect = 9e-35
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 241 atgccacctccaggaatcgaacctgggtttcatcggccacaacgatgtgtaataacccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30427 atgccacctccaggaatcgaacctgggtttcatcggccacaacgatgtgtaataacccct 30368
Query: 301 atactaagatggc 313
|||||||||||||
Sbjct: 30367 atactaagatggc 30355
>3x_Contig1772
Length = 25851
Score = 144 bits (72), Expect = 4e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 242 tgccacctccaggaatcgaacctgggtttcatcggccacaacgatgtgtaataaccccta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11892 tgccacctccaggaatcgaacctgggtttcatcggccacaacgatgtgtaataaccccta 11951
Query: 302 tactaagatggc 313
||||||||||||
Sbjct: 11952 tactaagatggc 11963
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,176
Number of Sequences: 1807
Number of extensions: 17176
Number of successful extensions: 2482
Number of sequences better than 1.0e-20: 4
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.3 bits)